Dr Eduardo Eyras Jimenez
Professor - EMBL Australia Group Leader
ANU College of Health and Medicine
Areas of expertise
- Bioinformatics And Computational Biology 3102
- Deep Learning 461103
- Synthetic Biology 310113
- Genomics And Transcriptomics 310204
Publications
- Eyras Jimenez, E & Reixachs, M 2022, 'Uncovering the impacts of alternative splicing on the proteome with current omics techniques', Wiley Interdisciplinary Reviews: RNA , vol. 13, no. 4.
- Trincado, J, Reixachs, M, Perez-Granado, J et al. 2021, 'ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer', PLOS Computational Biology, vol. 17, no. 9, pp. 1-22.
- Yuen, Z, Srivastava, A, Daniel, R et al. 2021, 'Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing', Nature Communications, vol. 12, no. 1.
- Reixachs, M, Ruiz-Orera, J, Alba, M et al. 2020, 'Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome', Nature Communications, vol. 11, no. 1, pp. 1-12.
- Ruiz-Reche, A, Srivastava, A, Indi, J et al. 2019, 'ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning', Genome Biology, vol. 20, no. 1.
- Trincado, J, Entizne, J, Hysenaj, G et al. 2018, 'SUPPA2: Fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions', Genome Biology, vol. 19, no. 40, p. 11.
- Climente-Gonzalez, H, Porta-Pardo, E, Godzik, A et al. 2017, 'The Functional Impact of Alternative Splicing in Cancer', Cell Reports, vol. 20, no. 9, pp. 2215-2226pp.
- Singh, B & Eyras Jimenez, E 2017, 'The role of alternative splicing in cancer', Transcription (Austin), vol. 8, no. 2, pp. 91-98pp.
- Trincado, J, Sebestyen, E, Pagès, A et al. 2016, 'The prognostic potential of alternative transcript isoforms across human tumors', Genome Medicine, vol. 8, no. 85, pp. 14pp.
- Sebestyen, E, Singh, B, Miñana, B et al. 2016, 'Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks', Genome Research, vol. 26, no. 6, pp. 732-744pp.
Projects and Grants
Grants information is drawn from ARIES. To add or update Projects or Grants information please contact your College Research Office.
- Accelerating messenger RNA (mRNA) therapeutics by cracking the epitranscriptomic code (Primary Investigator)
- RNA-4RD: Disease-agnostic, nationally-accessible pipelines of clinical RNA Diagnostics (Secondary Investigator)
- Establishing the Canberra Brain Cancer Collaborative to connect patients with research, drug discovery and clinical trials (Secondary Investigator)
- How novel ribosomal RNA gene repeat variants drive cellular function (Primary Investigator)
- How and why cells decorate their genetic messages (Secondary Investigator)
