Professor John Bekkers
Areas of expertise
- Central Nervous System 110903
- Cellular Nervous System 110902
Research interests
My group works on the neurons and circuits in the brain that underlie the sense of smell. In particular, we focus on the olfactory cortex, a brain region that is responsible for our ability to recognise and remember odours. By studying this cortex, we hope to elucidate how the brain processes sensory information in order to form a coherent picture of the outside world. This kind of fundamental research is important for an eventual understanding of how brain circuits become dysfunctional in certain mental disorders, like schizophrenia and autism. The olfactory cortex is also highly susceptible to epilepsy, Alzheimer's Disease and Parkinson's Disease, and the study of this cortex may reveal new understanding and therapies for these devastating and surprisingly common neurological disorders.
Biography
Born in Barcaldine, western Queensland, Australia.
Grew up in Darwin and Brisbane, Australia.
Tertiary education:
Griffith University, Brisbane - BSc (Hons 1) physics
Manchester University, UK - MSc history & philosophy of science
Cambridge University, UK - PhD neuroscience
Postdoctoral training:
Yale University School of Medicine, New Haven, CT, USA
Salk Institute, La Jolla, CA, USA
Honours & Awards:
Griffith University Medal
Commonwealth Scholarship to the UK
Gedge Prize in Biology, Cambridge University
Queen Elizabeth II Research Fellowship
Alexander von Humboldt Research Fellowship
Award for Education in Neuroscience, US Society for Neuroscience
Interests:
hiking/bushwalking
French language & literature
Researcher's projects
1. Excitability and hyperexcitability of neural circuits in the rodent piriform cortex (NHMRC Project Grant):
This project uses patch clamping, calcium imaging and molecular genetic approaches to study the spread of electrical activity in the piriform cortex (PC) of mice. The PC is a phylogenetically-ancient cortical region with a much simpler structure than other sensory cortices. This comparative simplicity means that it is an ideal system in which to study fundamental questions about normal and abnormal brain function. Surprisingly, the PC has been little-studied. Major aims of this project are: 1. To use functional calcium imaging to track the spread of electrical excitability through identified microcircuits in different layers of acute slices of the mouse PC following stimulation of inputs from the olfactory bulb. This is done under both normal and epileptic conditions. 2. To use a novel transgenic mouse to selectively manipulate electrical activity in layer II semilunar cells using optogenetic techniques. This is a collaboration with Sacha Nelson, Brandeis University, USA.
2. Neural circuits for odour-processing in the rodent piriform cortex 'in vivo' (NHMRC Project Grant):
This project uses 'blind' and two-photon targeted patch clamping in vivo to measure the responses of identified neurons in the piriform cortex to odour application. This work will allow us to examine the functional roles of the different classes of glutamatergic and GABAergic neurons that we have identified in slices of the piriform cortex. The project will also use a 'periscope' method to image changes in intracellular calcium across the full thickness of the piriform cortex when applying odours to the nose. This should allow us to study the mechanisms giving rise to beta oscillations in electrical activity during odour processing. This work is a collaboration with Matthew Larkum, Charite Medical University, Germany.
3. Persistent firing in cortical interneurons: Mechanisms and potential anticonvulsant role (NHMRC Project Grant):
This project uses whole-cell patch clamping and voltage imaging to study the mechanisms and possible functions of a recently-discovered phenomenon called persistent firing, which is found in some classes of cortical interneurons. Persistent firing is a state of heightened excitability, in which neurons slowly integrate excitatory inputs until eventually (after a few seconds) they start to fire action potentials at a high frequency, even after the initiating excitation is stopped. We hypothesise that persistent firing is an adaptation to counter undesirable cortical hyperexcitability, such as occurs during epileptic seizures. This idea will be tested. The project also involves developing computational models to test our ideas about how persistent firing affects neuronal networks. This work is a collaboration with Mark McDonnell, University of South Australia.
Available student projects
Here are some ideas for possible research projects for students wishing to join the Laboratory.
1. Development of a cultured slice preparation of the piriform cortex and olfactory bulb, to be used to address a number of questions that involve applying molecular genetic approaches to the study of olfactory circuitry.
2. 'In vivo' patch clamp and calcium imaging of identified GABAergic interneurons in the piriform cortex during responses to odours.
3. Investigation of the cellular mechanisms responsible for the hyperexcitability of 'area tempestas', a region in deep piriform cortex and the endopiriform nucleus that is an important site for the initiation of epileptic seizures.
Publications
- Carter, A, Richards, L, Apthorp, D et al. 2020, 'Erratum: A Neuroethics Framework for the Australian Brain Initiative', Neuron, vol. 105, no. 1, p. 201.
- Bekkers, J 2020, 'Autaptic Cultures: Methods and Applications', Frontiers in Synaptic Neuroscience, vol. 12, pp. 1-20.
- Badcock, D, Bartlett, P, Bekkers, J et al. 2016, 'Stuart- Australian Brain Alliance', Neuron, vol. 92, no. 3, pp. 597-600.
- Ikeda, K, Suzuki, N & Bekkers, J 2018, 'Sodium and potassium conductances in principal neurons of the mouse piriform cortex: a quantitative description', Journal of Physiology, vol. 596, no. 22, pp. 5397-5414pp.
- Gerrard, L, Tantirigama, M & Bekkers, J 2018, 'Pre- and postsynaptic activation of GABA-B receptors modulates principal cell excitation in the piriform cortex', Frontiers in Cellular Neuroscience, vol. 12, no. 28, pp. 1-11pp.
- Tantirigama, M, Huang, H & Bekkers, J 2017, 'Spontaneous activity in the piriform cortex extends the dynamic range of cortical odor coding', PNAS - Proceedings of the National Academy of Sciences of the United States of America, vol. 114, no. 9, pp. 2407-2412.
- Choy, J, Suzuki, N, Shima, Y et al 2015, 'Optogenetic Mapping of Intracortical Circuits Originating from Semilunar Cells in the Piriform Cortex', Cerebral Cortex, eprint, pp. 1-13. Print: vol. 27, no. 1, pp 589-901 (2017).
- Bekkers, J 2015, 'Axial resistivity', in Dieter Jaeger, Ranu Jung (ed.), Encyclopedia of Computational Neuroscience, Springer New York, New York, NY, pp. 2617-2619pp.
- Suzuki, N, Tang, CS-M & Bekkers, JM 2014, 'Persistent barrage firing in cortical interneurons can be induced in vivo and may be important for the suppression of epileptiform activity', Frontiers in Cellular Neuroscience, vol. 8, no. 76, pp. 1-11.
- Bekkers, J & Suzuki, N 2013, 'Neurons and circuits for odor processing in the piriform cortex', Trends in Neurosciences, vol. 36, no. 7, pp. 429-438.
- Suzuki, N & Bekkers, J 2012, 'Microcircuits mediating feedforward and feedback synaptic inhibition in the piriform cortex', Journal of Neuroscience, vol. 32, no. 3, pp. 919-931.
- Suzuki, N & Bekkers, J 2011, 'Two layers of synaptic processing by principal neurons in piriform cortex', Journal of Neuroscience, vol. 31, no. 6, pp. 2156-2166.
- Bekkers, J 2011, 'Changes in dendritic axial resistance alter synaptic integration in cerebellar Purkinje cells', Biophysical Journal, vol. 100, no. 5, pp. 1198-1206.
- Bekkers, J 2011, 'Pyramidal Neurons', Current Biology, vol. 21, no. 24, pp. R975-R975.
- Daria, V, Stricker, C, Bekkers, J et al. 2010, 'Dynamic complex optical fields for optical manipulation, 3D microscopy and photostimulation of neurotransmitters', Optical Trapping and Optical Micromanipulation VII, SPIE - The International Society for Optical Engineering, San Diego, CA.
- Suzuki, N & Bekkers, JM 2010, 'Distinctive Classes of GABAergic Interneurons Provide Layer-Specific Phasic Inhibition in the Anterior Piriform Cortex', Cerebral Cortex, vol. 20, no. 12, pp. 2971-2984.
- Suzuki, N & Bekkers, JM 2010, 'Inhibitory Neurons in the Anterior Piriform Cortex of the Mouse: Classification Using Molecular Markers', Journal of Comparative Neurology, vol. 518, no. 10, pp. 1670-1687.
- Bekkers, J 2009, 'Synaptc transmission: excitatory autapses find a function?', Current Biology, vol. 19, no. 7, pp. 296-298.
- Ikeda, K & Bekkers, JM 2009, 'Counting the number of releasable synaptic vesicles in a presynaptic terminal', PNAS - Proceedings of the National Academy of Sciences of the United States of America, vol. 106, no. 8, pp. 2945-2950.
- Ikeda, K & Bekkers, JM 2009, 'Two strategies for the efficient use of synaptic vesicles', Communicative & Integrative Biology, vol. 2, no. 6, pp. 1-4.
- Ikeda, K, Yanagawa, Y & Bekkers, JM 2008, 'Distinctive Quantal Properties of Neurotransmission at Excitatory and Inhibitory Autapses Revealed Using Variance-Mean Analysis.', Journal of Neuroscience, vol. 28, no. 50, pp. 13563-13573.
- Bekkers, JM & Hausser, M 2007, 'Targeted dendrotomy reveals active and passive contributions of the dendritic tree to synaptic integration and neuronal output.', PNAS - Proceedings of the National Academy of Sciences of the United States of America, vol. 104, no. 27, pp. 11447-11452.
- Suzuki, N & Bekkers, JM 2007, 'Inhibitory Interneurons in the Piriform Cortex', Clinical and Experimental Pharmacology and Physiology, vol. 34, pp. 1064-1069.
- Ikeda, K & Bekkers, JM 2006, 'Autapses', Current Biology, vol. 16, no. 9, pp. R308.
- McColl, C, Jacoby, A, Shine, J, Ismaa, T & Bekkers JM 2006, 'Galanin receptor-1 knockout mice exhibit spontaneous epilepsy, abnormal EEG's and altered inhibition in the hippocampus', Neuropharmacology, vol. 50, pp. 209-218.
- Suzuki, N & Bekkers, JM 2006, 'Neural coding by two classes of principal cells in the mouse piriform cortex', Journal of Neuroscience, vol. 26, no. 46, pp. 11938-11947.
- Bekkers, JM 2005, 'Presynaptically Silent GABA Synapses in Hippocampus', Journal of Neuroscience, vol. 25, no. 16, pp. 4031-4039.
- Richerson, GB & Bekkers, JM 2004, 'Learning to take a deep breath - with BDNF', Nature Medicine, vol. 10, no. 1, pp. 25-26.
- Bekkers, JM 2003, 'Convolution of mini distributions for fitting evoked synaptic amplitude histograms', Journal of Neuroscience Methods, vol. 130, no. 2, pp. 105-114.
- Bekkers, JM 2003, 'Synaptic transmission: Functional autapses in the cortex', Current Biology, vol. 13, no. 11, pp. R433-R435.
- Reid, CA, Bekkers, JM & Clements, JD 2003, 'Presynaptic Ca2+ channels: a functional patchwork', Trends in Neurosciences, vol. 26, no. 12, pp. 683-687.
- Bekkers, JM 2002, 'Synaptic transmission: a new kind of inhibition', Current Biology, vol. 12, pp. R648-650.
- Bekkers, JM & Delaney, AJ 2001, 'Modulation of excitability by α-dendrotoxin-sensitive potassium channels in neocortical pyramidal neurons', Journal of Neuroscience, vol. 21, no. 17, pp. 6553-6560.
- Chieng, B & Bekkers, JM 2001, 'Inhibition of calcium channels by opioid- and adenosine-receptor agonists in neurons of the nucleus accumbens', British Journal of Pharmacology, vol. 133, pp. 337-344.
- Bekkers, JM 2000, 'Distribution and activation of voltage-gated potassium channels in cell- attached and outside-out patches from large layer 5 cortical pyramidal neurons of the rat', Journal of Physiology, vol. 525, pp. 611-620.
- Bekkers, JM 2000, 'Distribution of slow AHP channels on hippocampal CA1 pyramidal neurons', Journal of Neurophysiology, vol. 83, pp. 1756-1759.
- Bekkers, JM 2000, 'Properties of voltage-gated potassium currents in nucleated patches from large layer 5 cortical pyramidal neurons of the rat', Journal of Physiology, vol. 525, pp. 593-609.
- Bekkers, JM & Clements, JD 1999, 'Quantal amplitude and quantal variance of strontium-induced asynchronous EPSCs in rat dentate granule neurons', Journal of Physiology, vol. 516, no. 1, pp. 227-248.
- Chieng, B & Bekkers, JM 1999, 'GABA(B), opioid and alpha2 receptor inhibition of calcium channels in acutely-dissociated locus coeruleus neurones', British Journal of Pharmacology, vol. 127, pp. 1533-1538.
Projects and Grants
Grants information is drawn from ARIES. To add or update Projects or Grants information please contact your College Research Office.
- Novel roles for NMDA receptors in cortical processing (Primary Investigator)
- Coding of olfactory information in the piriform cortex (Primary Investigator)
- Learning and network plasticity in a primitive sensory cortex (Primary Investigator)
- 200B MiniPID Gas Sensor (See 27886) (Primary Investigator)
- Neural circuits for odour-processing in the rodent piriform cortex "in vivo" (Primary Investigator)
- Electrophysiology package for in vivo 2-photon microscope facility (See 22085) (Primary Investigator)
- Excitability and hyperexcitability of neural circuits in the rodent piriform cortex (Primary Investigator)
- Synaptic Inhibition and the Control of Excitability in the Rodent Piriform Cortex (Primary Investigator)